Publications

PhenoScreen: A Dual-Space Contrastive Learning Framework-based Phenotypic Screening Method by Linking Chemical Perturbations to Cellular Morpholog

Published in bioRxiv, 2024

Shihang Wang, Qilei Han, Weichen Qin, Lin Wang, Junhong Yuan, Yiqun Zhao, Pengxuan Ren, Yunze Zhang, Yilin Tang, Ruifeng Li, Zongquan Li, Wenchao Zhang, Shenghua Gao and Fang Bai, "PhenoScreen: A Dual-Space Contrastive Learning Framework-based Phenotypic Screening Method by Linking Chemical Perturbations to Cellular Morpholog." bioRxiv, 2024.

Conformational Space Profiling Enhances Generic Molecular Representation for AI-Powered Ligand-Based Drug Discovery

Published in Advanced Science, 2024

Lin Wang, Shihang Wang, Hao Yang, Shiwei Li, Xinyu Wang, Yongqi Zhou, Siyuan Tian, Lu Liu, and Fang Bai, "Conformational Space Profiling Enhances Generic Molecular Representation for AI-Powered Ligand-Based Drug Discovery." Advanced Science, 2024.

Computer-Aided Prediction of the Interactions of Viral Proteases with Antiviral Drugs: Antiviral Potential of Broad-Spectrum Drugs

Published in Molecules, 2023

Pengxuan Ren, Shiwei Li, Shihang Wang, Xianglei Zhang, Fang Bai, "Computer-Aided Prediction of the Interactions of Viral Proteases with Antiviral Drugs: Antiviral Potential of Broad-Spectrum Drugs." Molecules, 2023.

DeepSA: a deep-learning driven predictor of compound synthesis accessibility

Published in Journal of Cheminformatics, 2023

Shihang Wang, Lin Wang, Fenglei Li, Fang Bai, "DeepSA: a deep-learning driven predictor of compound synthesis accessibility." Journal of Cheminformatics, 2023.

DeepmRNALoc: a novel predictor of eukaryotic mRNA subcellular localization based on deep learning

Published in Molecules, 2023

Shihang Wang, Zhehan Shen, Taigang Liu, Wei Long, Linhua Jiang, Sihua Peng, "DeepmRNALoc: a novel predictor of eukaryotic mRNA subcellular localization based on deep learning." Molecules, 2023.

Metagenomics revealing molecular profiles of microbial community structure and metabolic capacity in Bamucuo lake, Tibet

Published in Environmental Research, 2023

Cai Wei, Dan Sun, Wenliang Yuan, Lei Li, Chaoxu Dai, Zuozhou Chen, Xiaomin Zeng, Shihang Wang, Yuyang Zhang, Shouwen Jiang, Zhichao Wu, Dong Liu, Linhua Jiang, Sihua Peng, "Metagenomics revealing molecular profiles of microbial community structure and metabolic capacity in Bamucuo lake, Tibet." Environmental Research, 2023.

Molecular evolutionary characteristics of SARS-CoV-2 emerging in the United States

Published in Journal of medical virology, 2022

Shihang Wang, Xuanyu Xu, Cai Wei, Sicong Li, Jingying Zhao, Yin Zheng, Xiaoyu Liu, Xiaomin Zeng, Wenliang Yuan, Sihua Peng, "Molecular evolutionary characteristics of SARS-CoV-2 emerging in the United States." Journal of medical virology, 2022.

Clarifying real receptor binding site between coronavirus HCoV-HKU1 and 9-O-Ac-Sia based on molecular docking

Published in Journal of Bioinformatics and Computational Biology, 2022

Xiaoyu Liu, Jingying Zhao, Sicong Li, Cai Wei, Shihang Wang, Xuanyu Xu, Yin Zheng, Xiangyu Deng, Wenliang Yuan, Xiaomin Zeng, Sihua Peng, "Clarifying real receptor binding site between coronavirus HCoV-HKU1 and 9-O-Ac-Sia based on molecular docking." Journal of Bioinformatics and Computational Biology, 2022.